Dead or dead tired?

Bacteria can likely survive in hostile environments for hundreds of millions of years by entering various states of dormancy. This ability to remain viable without detectable metabolism blurs the line between life, death, and deep sleep. (Photo credit – Iuliia Morozova)

Back in the 1990s, three scientists from West Chester University discovered a tiny brine pocket within a salt crystal in the Permian Salado Formation at the border between the US and Mexico. This pocket contained a droplet of water with trapped bacterial spores. These spores turned out to represent two bacterial species: Bacillus marismortui and Virgibacillus pantothenticus. Their isotope dating analysis indicated that these spore specimens were approximately 250 million years old. The most remarkable fact was that, when transferred to growth media, these spores could rapidly germinate and produce actively growing bacteria. Thus, these species have literally slept through the rise and fall of dinosaurs and the subsequent rise of mammals. To date, these spore samples hold the documented record of how long a living cell can remain viable in a state of dormancy.

Although some scientists have expressed skepticism about this discovery, noting that reports of ancient bacteria found in rock, coal, and Egyptian temples have not stood up to scientific scrutiny, similar findings have been made for other organisms. For instance, in one subsequent study, 100-million-year-old samples of dormant aerobic bacteria from ancient sea-floor sediments were successfully brought to life—providing another demonstration of the exceptional longevity of dormant microbial cells.

The question, however, stands regardless of any imaginable skepticism: For how long can an organism remain viable in a state of dormancy? If we find a way to protect biological molecules from damage caused by oxygen or radiation, can “simple” organisms, such as bacteria, remain viable forever?

While the answer to this question remains to be found (ironically, supported by research funded through grants that typically last about 5 years), let’s consider several documented examples of this longevity:

– A human oocyte in a female body can remain dormant but viable for over 30 years.

– A plant seed, such as that of a cucumber, retains its ability to germinate for up to 5 years—however, the oldest viable seed that has grown into a full plant was a roughly 2,000-year-old Judean date palm seed (germinated in 2005).

– Bacterial spores, like the ones mentioned above, can likely remain viable for hundreds of millions of years—a time span that greatly exceeds the age of most modern species (E. coli, for instance, are estimated to be about 20 million years old, ad we humans, for instance, are likely only about 200,000 to 300,000 years old as species).

The key question is: how do dormant cells die? What happens to the molecular structures comprising a living cell that transform a dormant cell into a dead one? And what are the major factors that catalyze this transition? Is it related to the UV radiation of genomic DNA that prevents DNA from replicating? Is it about the damage to all or a few key proteins caused by oxygen molecules? Is it about the stability of membranes? Or is it something else, perhaps exceeding our current understanding of the phenomenon of a living cell?

Perhaps some answers to these questions are written within the cells themselves—in factors that protect dormant cells from “premature” death. In all the aforementioned examples of dormancy, dormancy represents not mere inactivity but a genetically encoded program that has been evolving and reinventing itself from the very dawn of life to the present day. All these species, for instance, express special protective proteins, which include so-called hibernation factor proteins, LEA proteins, and others.

(to be continued)


Odds of being alive

Every time I hear people ranting about life being unfair, huffing and puffing if things don’t go their way, I recall this stunning visual: “What are the odds”. It estimates our odds of being alive, showing they are just a fraction above zero, or 1 in 102,685,000 if you like math.

Imagine: 1 in 102,685,000. As someone put it, “that probability is the same as if you handed out 2 million dice, each dice with one trillion sides… then rolled those 2 million dice and had them all land on 439,505,270,846.” It seems we are damn good at gambling! At least for once. So, when next time your dumb classmate gets into Harvard and you fail as a valedectorian, please recall this absurdly slim chance of your existance, and take a moment to appreciate this unique gift of luck — to be alive as a concious human being, to share this transient journey we call life with people we love, to get a chance to understand and explore ourselves and the universe around us, to breath air and enjoy warm rays of the morning Sun — all those things we take for granted while being obsessed with the cherry on top. Because, if scientists got it right, our life is highly improbable, and it won’t last for long. Thus, luckily for us, life is tremendously unfair, if you see what I mean.

Integrated bug management

In late 1970s, agriculture encountered a major crisis in pesticide resistance leading to the near-collapse of the cotton industry in several countries. This crisis forced the industry to devise the Integrated Pest Management (IPM), an approach that aims to minimize the risk of pesticide resistance by limiting pesticide use and by trying to manage pests rather than trying to eradicate them. Our recent paper provides a small “stone” for the emerging “building” of a similar approach – adaptive therapy – that aims to improve the way use antimicrobial and anticancer drugs: https://www.pnas.org/content/early/2020/07/10/2003132117

Please check out this wonderful blog post by Maria O’Hanlon discussing our work and this emerging new trend in more sustainable drug application: https://bit.ly/3fs45sr